Home

Developing Approaches For Modeling Genomic And Proteomic Profiles In Lung Cancer

Pamela Markell Mcmahon
Massachusetts General Hospital

Grant 5K99CA126147-02 from National Cancer Institute, IRG: ZCA1

Abstract: Despite recent decreases in smoking rates, lung cancer claimed more than 163,000 American lives in 2005. Interest in possible lung cancer screening programs is intense; several large ongoing trials are evaluating imaging technologies to detect early-stage lung cancer. In addition, public and private investment in genomic and proteomic research may add biomarkers to the list of tools for lung cancer screening. Decisions about the appropriate roles of imaging and biomarkers in lung cancer screening programs can be informed by modeling, a formal, transparent way to integrate available data. In the proposed independent phase, I will incorporate genomic and proteomic profiles into the Lung Cancer Policy Model, a comprehensive microsimulation model of lung cancer designed to evaluate the cost, effectiveness, and cost-effectiveness of screening programs. I am an outcomes researcher with experience in developing complex disease simulation models, including the natural history model at the core of the Lung Cancer Policy Model. My long term research agenda is to develop methods and approaches to making disease simulation models more robust and useful to decision makers. Specifically, future approaches for cancer screening, treatment, and surveillance promise to be increasingly tailored to the individual patient. Modeling cancer interventions will require much more detail on individual characteristics and clinical algorithms than is now typical in disease simulation models. The site of the proposed study, the Institute for Technology Assessment (ITA) at Massachusetts General Hospital, offers a rich combination of facilities, expertise, and mentorship. The proposed Sponsor, G. Scott Gazelle, MD MPH PhD, became my primary mentor when I joined the ITA in 1998 as a research assistant, and recently chaired my doctoral dissertation committee. We have established a comfortable and productive work environment and have developed a mentoring plan that will allow me to complete my transition to an independent researcher role. Protected time for coursework, meetings with an Advisory Committee of clinical and modeling experts, and completion of ongoing analyses involving the Lung Cancer Policy Model will position me appropriately to undertake the proposed research and apply for an independent research award

Keywords: lung, model, neoplasm /cancer, proteomics aging, base, bias, biomarker, cell type, choice, cost effectiveness, experience, growth /development, hospital, mass screening, metastasis, motivation, reduction, role, sex, smoking, statistics /biometry, therapy, work site clinical research

Project start date: 2007-08-01

Project end date: 2009-07-31


Sponsored Links Lab Supply Mall http://www.labsupplymall.com

Invitrogen NuPAGE Novex 4-12% Bis-Tris Gels
Best resolution and most consistent results,long shelf-life - at least 8 months! . $117.5, $95
Invitrogen Life Technology Gibo Lipofectamine 2000, 1.5 ml, Cat 11668-019
Unsurpassed Results for DNA and siRNA Transfections. $399, $350
New Invitrogen UltraPure Agarose 500g
UltraPure Agarose resolves DNA and RNA fragments from 100 bp to >30 kb. $432, $350
Qiagen QIAprep Spin Miniprep Kit (250), Cat # 27106
For purification of up to 20 ug molecular biology grade plasmid DNA. $328, $285
QIAGEN Plasmid Maxi Kit (10), Cat # 12162
For purification of up to 500 ug transfection grade plasmid or cosmid DNA. $192, $150
GR Safe Nucleic Acid Stain
Excellent Alternative to Ethidium Bromide: Safety, Sensitivity, Stability. $78, $58
Qiagen Ni-NTA Agarose beads 25 ml Cat # 30210
For purification of 6xHis-tagged proteins by gravity-flow chromatography. $225, $180
Amersham ECL Plus Western Blotting Detection Reagents, Cat # RPN2132
Superior sensitivity.. $230, $55
Qiagen EndoFree Plasmid Maxi Kit (10), Cat # 12362
For purification of up to 500 ug advanced transfection grade plasmid or cosmid DNA. $266, $210
Invitrogen Human Cot-1 DNA Cat# 15279-011
Block non-specific hybridization in microarray screening. $155, $120


Grants awarded to Pamela Markell Mcmahon

Developing Approaches For Modeling Genomic And Proteomic Profiles In Lung Cancer

Pamela Markell Mcmahon
Massachusetts General Hospital

Grant 5K99CA126147-02 from National Cancer Institute, IRG: ZCA1

Abstract: Despite recent decreases in smoking rates, lung cancer claimed more than 163,000 American lives in 2005. Interest in possible lung cancer screening programs is intense; several large ongoing trials are evaluating imaging technologies to detect early-stage lung cancer. In addition, public and private investment in genomic and proteomic research may add biomarkers to the list of tools for lung cancer screening. Decisions about the appropriate roles of imaging and biomarkers in lung cancer screening programs can be informed by modeling, a formal, transparent way to integrate available data. In the proposed independent phase, I will incorporate genomic and proteomic profiles into the Lung Cancer Policy Model, a comprehensive microsimulation model of lung cancer designed to evaluate the cost, effectiveness, and cost-effectiveness of screening programs. I am an outcomes researcher with experience in developing complex disease simulation models, including the natural history model at the core of the Lung Cancer Policy Model. My long term research agenda is to develop methods and approaches to making disease simulation models more robust and useful to decision makers. Specifically, future approaches for cancer screening, treatment, and surveillance promise to be increasingly tailored to the individual patient. Modeling cancer interventions will require much more detail on individual characteristics and clinical algorithms than is now typical in disease simulation models. The site of the proposed study, the Institute for Technology Assessment (ITA) at Massachusetts General Hospital, offers a rich combination of facilities, expertise, and mentorship. The proposed Sponsor, G. Scott Gazelle, MD MPH PhD, became my primary mentor when I joined the ITA in 1998 as a research assistant, and recently chaired my doctoral dissertation committee. We have established a comfortable and productive work environment and have developed a mentoring plan that will allow me to complete my transition to an independent researcher role. Protected time for coursework, meetings with an Advisory Committee of clinical and modeling experts, and completion of ongoing analyses involving the Lung Cancer Policy Model will position me appropriately to undertake the proposed research and apply for an independent research award

Keywords: lung, model, neoplasm /cancer, proteomics aging, base, bias, biomarker, cell type, choice, cost effectiveness, experience, growth /development, hospital, mass screening, metastasis, motivation, reduction, role, sex, smoking, statistics /biometry, therapy, work site clinical research

Project start date: 2007-08-01

Project end date: 2009-07-31



Related Publications